How to download Variants of Concern Data, using python
Pretty Easy, once you can link it. No saving files necessary
#variants #gisaid #python
import pandas as pd
import plotly.express as px
variants=pd.read_csv(‘https://github.com/owid/covid-19-data/blob/master/public/data/variants/covid-variants.csv?raw=true’,parse_dates = [‘date’])
variants[variants[‘location’]==”Hungary”].tail(50)
omi = variants[variants[‘variant’]==’Omicron’]
mix = variants.groupby([‘date’,’variant’])[‘perc_sequences’].mean().reset_index()
varp= variants.groupby([‘location’,’variant’])[[‘date’, ‘perc_sequences’]].last().reset_index()
varp= varp.query(‘perc_sequences > 0’) #greater than size
varp[‘date’] = varp[‘date’].dt.strftime(‘%m/%d/%Y’)
fig = px.bar( varp, x= ‘location’, y=’perc_sequences’, color=’variant’, hover_data= [‘variant’,’date’], height=900)
fig.update_layout(legend_traceorder=”normal”,template=’plotly_dark’,legend=dict(
itemclick=”toggleothers”,
itemdoubleclick=”toggle”,itemsizing=’trace’),hoverlabel=dict(
bgcolor=”red”,
font_size=30,
font_family=”Rockwell”
) )
fig.show()